#Parser to convert the Datini onomastics CSV file into TTL format # Utilities to read/write csv files import csv # Utilities to handle character encodings import unicodedata # Ordered Dicts from collections import OrderedDict import json import re # OPZIONAL IMPORTS # For timestamping/simple speed tests from datetime import datetime # Random number generator from random import * # System & command line utilities import sys # Json for the dictionary import json import_dir = '/Users/federicaspinelli/TEAMOVI/Parser/DATA/ASPO/CSV/ospedale/' export_dir = '/Users/federicaspinelli/TEAMOVI/Parser/DATA/ASPO/RDF/ospedale/' # Custom class to store URIs + related infos for the ontologies/repositories class RDFcoords: def __init__(self, uri, prefix, code = None): self.uri = uri self.prefix = prefix self.code = code # Repositories aspoCoords = RDFcoords('', 'aspo:') foafCoords = RDFcoords('', 'foaf:') cidocCoords = RDFcoords('', 'crm:') schemaCoords = RDFcoords('', 'schema:') personCoords = RDFcoords('', 'person:') nsCoords = RDFcoords('', 'rdf:') rdfsCoords = RDFcoords('', 'rdfs:') owlCoords = RDFcoords('', 'owl:') # Basic functions for triples / shortened triples in TTL format def triple(subject, predicate, object1): line = subject + ' ' + predicate + ' ' + object1 return line def doublet(predicate, object1): line = ' ' + predicate + ' ' + object1 return line def singlet(object1): line = ' ' + object1 return line # Line endings in TTL format continueLine1 = ' ;\n' continueLine2 = ' ,\n' closeLine = ' .\n' def writeTTLHeader(output): output.write('@prefix ' + aspoCoords.prefix + ' ' + aspoCoords.uri + closeLine) output.write('@prefix ' + foafCoords.prefix + ' ' + foafCoords.uri + closeLine) output.write('@prefix ' + cidocCoords.prefix + ' ' + cidocCoords.uri + closeLine) output.write('@prefix ' + personCoords.prefix + ' ' + personCoords.uri + closeLine) output.write('@prefix ' + schemaCoords.prefix + ' ' + schemaCoords.uri + closeLine) output.write('@prefix ' + nsCoords.prefix + ' ' + nsCoords.uri + closeLine) output.write('@prefix ' + rdfsCoords.prefix + ' ' + rdfsCoords.uri + closeLine) output.write('@prefix ' + owlCoords.prefix + ' ' + owlCoords.uri + closeLine) output.write('\n') filePrefix = 'OSPEDALE - onomastica ' fileType = '- persone singole' max_entries = 10000000000000 with open(import_dir + filePrefix + fileType + '.csv', newline="") as csv_file, open( export_dir + filePrefix + fileType + '.ttl', 'w') as output: reader = csv.DictReader(csv_file) writeTTLHeader(output) first = True ii = 0 for row in reader: # The index ii is used to process a limited number of entries for testing purposes ii = ii + 1 if row['entityType'] == 'person': id_aspo = row['recordId'] #placeHolders aspoPlaceHolder = aspoCoords.prefix + id_aspo line = triple(aspoPlaceHolder, nsCoords.prefix + 'type', cidocCoords.prefix + 'E21_Person') + closeLine output.write(line) line = triple(aspoPlaceHolder, nsCoords.prefix + 'type', personCoords.prefix + 'Person') + closeLine output.write(line) line = triple(aspoPlaceHolder, nsCoords.prefix + 'type', foafCoords.prefix + 'person') + closeLine output.write(line) line = triple(aspoPlaceHolder, cidocCoords.prefix + 'P1_is_identified_by', aspoPlaceHolder + "_E42") + closeLine output.write(line) line = triple(aspoPlaceHolder + "_E42", nsCoords.prefix + 'type', cidocCoords.prefix + 'E42_Identifier') + closeLine output.write(line) line = triple(aspoPlaceHolder + "_E42", rdfsCoords.prefix + 'label', '\"' + id_aspo + '\"') + closeLine output.write(line) line = triple(aspoPlaceHolder, foafCoords.prefix + 'name', '\"' + row['nameEntry@normal'] + '\"') + closeLine output.write(line) line = triple(aspoPlaceHolder, rdfsCoords.prefix + 'label', '\"' + row['nameEntry@normal'] + '\"') + closeLine output.write(line) if row['nome proprio'] != '': #Remove all white-space characters: txt = row['nome proprio'] x = re.sub(" \n", "", txt) y = re.sub("\s\s", "", x) name = re.sub("\n", "", y) line = triple(aspoPlaceHolder, foafCoords.prefix + 'givenName', '\"' + name + '\"') + closeLine output.write(line) if row['nome di famiglia'] != '': #Remove all white-space characters: txt = row['nome di famiglia'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) line = triple(aspoPlaceHolder, foafCoords.prefix + 'familyName', '\"' + y + '\"') + closeLine output.write(line) if row['Alias'] != '' and row['Alias'] != ' ': #Remove all white-space characters: txt = row['Alias'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) line = triple(aspoPlaceHolder, schemaCoords.prefix + 'alternateName', '\"' + y + '\"') + closeLine output.write(line) if row['genere'] != '': #Remove all white-space characters: txt = row['genere'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) line = triple(aspoPlaceHolder, foafCoords.prefix + 'gender', '\"' + y + '\"') + closeLine output.write(line) if row['patronimico/matronimico'] != '': #Remove all white-space characters: txt = row['patronimico/matronimico'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) line = triple(aspoPlaceHolder, personCoords.prefix + 'patronymicName', '\"' + y + '\"') + closeLine output.write(line) if row['occupation'] != '' and row['occupation'] != ' ' : occupazioni = [] pipe = "|" if pipe in row['occupation']: occupazioni = row['occupation'].split('|') for occupazione in occupazioni: #Remove all white-space characters: txt = occupazione x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) occ = re.sub(r'[^A-Za-z]','', y) occupationPlaceHolder = '' line = triple(aspoPlaceHolder, schemaCoords.prefix + 'hasOccupation', occupationPlaceHolder) + closeLine output.write(line) line = triple(occupationPlaceHolder, nsCoords.prefix + 'type', schemaCoords.prefix + 'Occupation') + closeLine output.write(line) line = triple(occupationPlaceHolder, rdfsCoords.prefix + 'label', '\"' + y + '\"') + closeLine output.write(line) else: #Remove all white-space characters: txt = row['occupation'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) occ = re.sub(r'[^A-Za-z]','', y) occupationPlaceHolder = '' line = triple(aspoPlaceHolder, schemaCoords.prefix + 'hasOccupation', occupationPlaceHolder) + closeLine output.write(line) line = triple(occupationPlaceHolder, nsCoords.prefix + 'type', schemaCoords.prefix + 'Occupation') + closeLine output.write(line) line = triple(occupationPlaceHolder, rdfsCoords.prefix + 'label', '\"' + y + '\"') + closeLine output.write(line) if (row['avo 1'] != ''): id = row['avo 1'] E13placeHolder = '" line = triple(E13placeHolder, nsCoords.prefix + 'type', cidocCoords.prefix + 'E13_Attribute_Assignment') + closeLine output.write(line) line = triple(E13placeHolder, cidocCoords.prefix + 'P141_assigned', aspoPlaceHolder) + closeLine output.write(line) line = triple(E13placeHolder, rdfsCoords.prefix + 'label', '\"Relazione: ' + row['avo 1'] + ' avo di secondo grado di ' + row['recordId'] + '\"') + closeLine output.write(line) if re.match(r'IT-ASPO', id): relazioneid = '" line = triple(relazioneid, cidocCoords.prefix + 'P141_assigned', E13placeHolder) + closeLine output.write(line) else: relazionenoid = '" line = triple(relazionenoid, cidocCoords.prefix + 'P141_assigned', E13placeHolder ) + closeLine output.write(line) line = triple(relazionenoid, rdfsCoords.prefix + 'label', '\"' + row['avo 1'] + '\"') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', cidocCoords.prefix + 'E21_Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', personCoords.prefix + 'Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', foafCoords.prefix + 'person') + closeLine output.write(line) E55placeHolder = '' line = triple(E13placeHolder, cidocCoords.prefix + 'P42_assigned', E55placeHolder) + closeLine output.write(line) line = triple(E55placeHolder, rdfsCoords.prefix + 'label', '\"Avo di secondo grado\"') + closeLine output.write(line) if (row['avo 2'] != ''): id = row['avo 2'] E13placeHolder = '" line = triple(E13placeHolder, nsCoords.prefix + 'type', cidocCoords.prefix + 'E13_Attribute_Assignment') + closeLine output.write(line) line = triple(E13placeHolder, cidocCoords.prefix + 'P141_assigned', aspoPlaceHolder) + closeLine output.write(line) line = triple(E13placeHolder, rdfsCoords.prefix + 'label', '\"Relazione: ' + row['avo 2'] + ' avo di terzo grado di ' + row['recordId'] + '\"') + closeLine output.write(line) if re.match(r'IT-ASPO', id): relazioneid = '" line = triple(relazioneid, cidocCoords.prefix + 'P141_assigned', E13placeHolder) + closeLine output.write(line) else: relazionenoid = '" line = triple(relazionenoid, cidocCoords.prefix + 'P141_assigned', E13placeHolder ) + closeLine output.write(line) line = triple(relazionenoid, rdfsCoords.prefix + 'label', '\"' + row['avo 2'] + '\"') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', cidocCoords.prefix + 'E21_Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', personCoords.prefix + 'Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', foafCoords.prefix + 'person') + closeLine output.write(line) E55placeHolder = '' line = triple(E13placeHolder, cidocCoords.prefix + 'P42_assigned', E55placeHolder) + closeLine output.write(line) line = triple(E55placeHolder, rdfsCoords.prefix + 'label', '\"Avo di terzo grado\"') + closeLine output.write(line) if row['Qualifica'] != '': qualifiche = [] pipe = "|" if pipe in row['Qualifica']: qualifiche = row['Qualifica'].split('|') for qualifica in qualifiche: #Remove all white-space characters: txt = qualifica x = re.sub("\n", " ", txt) y = re.sub("\s\s", " ", x) line = triple(aspoPlaceHolder, schemaCoords.prefix + 'honorificPrefix', '\"' + str(y) + '\"') + closeLine output.write(line) else: #Remove all white-space characters: txt = row['Qualifica'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", " ", x) line = triple(aspoPlaceHolder, schemaCoords.prefix + 'honorificPrefix', '\"' + y + '\"') + closeLine output.write(line) if row['biogHist p'] != '': #Remove all white-space characters: txt = row['biogHist p'] x = re.sub("\n", " ", txt) y = re.sub("\s\s", " ", x) note = re.sub("\"", "", x) line = triple(aspoPlaceHolder, cidocCoords.prefix + 'P3_has_note', '\"' + note + '\"') + closeLine output.write(line) if row['Variante'] != '': varianti = [] pipe = "|" if pipe in row['Variante']: varianti = row['Variante'].split('|') for variante in varianti: line = triple(aspoPlaceHolder, owlCoords.prefix + 'sameAs', aspoCoords.prefix + str(variante)) + closeLine output.write(line) else: line = triple(aspoPlaceHolder, owlCoords.prefix + 'sameAs', aspoCoords.prefix + row['Variante']) + closeLine output.write(line) if row['provenienza'] != '': e53placeHolder = "" line = triple(aspoPlaceHolder, cidocCoords.prefix + 'P74_has_current_or_former_residence', e53placeHolder) + closeLine output.write(line) line = triple(e53placeHolder, nsCoords.prefix + 'type', cidocCoords.prefix + 'E53_Place') + closeLine output.write(line) line = triple(e53placeHolder, rdfsCoords.prefix + 'label', '\"' + row['provenienza'] + '\"') + closeLine output.write(line) line = triple(e53placeHolder, cidocCoords.prefix + 'P2_has_type', '\"Provenienza\"') + closeLine output.write(line) if (row['recordID relazione'] != ''): id = row['recordID relazione'] E13placeHolder = '" line = triple(E13placeHolder, nsCoords.prefix + 'type', cidocCoords.prefix + 'E13_Attribute_Assignment') + closeLine output.write(line) line = triple(E13placeHolder, cidocCoords.prefix + 'P141_assigned', aspoPlaceHolder) + closeLine output.write(line) line = triple(E13placeHolder, rdfsCoords.prefix + 'label', '\"Relazione: ' + row['recordID relazione'] + row['nome relazione'] + ' di ' + row['recordId'] + '\"') + closeLine output.write(line) if re.match(r'IT-ASPO', id): relazioneid = '" line = triple(relazioneid, cidocCoords.prefix + 'P141_assigned', E13placeHolder) + closeLine output.write(line) else: relazionenoid = '" line = triple(relazionenoid, cidocCoords.prefix + 'P141_assigned', E13placeHolder) + closeLine output.write(line) line = triple(relazionenoid, rdfsCoords.prefix + 'label', '\"' + row['recordID relazione'] + '\"') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', cidocCoords.prefix + 'E21_Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', personCoords.prefix + 'Person') + closeLine output.write(line) line = triple(relazionenoid, nsCoords.prefix + 'type', foafCoords.prefix + 'person') + closeLine output.write(line) if (row['nome relazione'] != ''): relazioni = [] pipe = "|" if pipe in row['nome relazione']: relazioni = row['nome relazione'].split('|') for relazione in relazioni: #Remove all white-space characters: txt = relazione x = re.sub("\n", " ", txt) y = re.sub("\s\s", "", x) rel = re.sub(r'[^A-Za-z]','', y) cleanlabel = rel.rstrip().lstrip() E55placeHolder = '' line = triple(E13placeHolder, cidocCoords.prefix + 'P42_assigned', E55placeHolder) + closeLine output.write(line) line = triple(E55placeHolder, rdfsCoords.prefix + 'label', '\"' + cleanlabel + '\"') + closeLine output.write(line) else: E55placeHolder = '' line = triple(E13placeHolder, cidocCoords.prefix + 'P42_assigned', E55placeHolder) + closeLine output.write(line) cleanlabel = row['nome relazione'].rstrip().lstrip() line = triple(E55placeHolder, rdfsCoords.prefix + 'label', '\"' + cleanlabel + '\"') + closeLine output.write(line) output.write('\n') # # # Limit number of entries processed (if desired) if (ii > max_entries): break